Informative hate site...I think not. I have a personal issue with running shoes, and it's my own fault that I hadn't tried out minimalistic shoes before I got into parkour training. I actually crushed the second, third, and fourth metatarsals in my left foot in combination to outward fractures of the first and fifth due to a motorcycle accident. After surgery and rehab, I tried to get back into running only to find that most running shoes caused me pretty chronic pain in the area that was once an arch in my foot. I can't thank people enough for suggesting that I switch to Feiyues, because I haven't been so comfortable running in any shoes since my injury. I had noticed that when I was practicing martial arts and kickboxing that running barefoot didn't have as adverse of a reaction as jogging in fancy jogging shoes, and leave it to me to take so long to come around. Sure, I have a very accurate indicator of when I'm overworking them, because my foot still tells me pretty quickly, but I'll take that as a good sign.
I'm not really adding a great deal to this post, except to say that "for me personally, there really isn't any argument. Barefoot is better."